PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_127.8

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 329aa MW: 36265.6 Da PI: 6.6241

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_127.8	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H evm.model.supercontig_127.8 148 FSCNYCQRKFYSSQALGGHQNAH 170 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.8E-6	145	175	No hit	No description
PROSITE profile	PS50157	11.427	148	175	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	150	170	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MESHRKLSEA SPSETSSCII SSSETPLVLH KINKEEVVVV VHDDEEEEED DHDHDHNDDQ 60 DQDQDQDHRR EGKPSDDHDL LLDLKLTTSG NDCHHLGNTN FINQELNLIS CLNSTTGLSS 120 SSSSSRTSPE TTNRHHQPQD QDQQQRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG 180 QRLPSSASAF GYHHFSTLPP FHGGRSLGIQ VHSMIHKPPQ IFSSSSSSSS PFSVFGKGYG 240 QYRSTTRLPF DQQPAVGKLI SMGNCHHMNS SSTPQSRSGV CRFNVVKSTT AVGSPAAAAD 300 EAWRFGGGLL STSSNQEELQ KLDLSLKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_127.8

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890670.1	0.0	zinc finger protein 3-like
Swissprot	Q39262	3e-51	ZFP3_ARATH; Zinc finger protein 3
TrEMBL	A0A061GIJ6	6e-64	A0A061GIJ6_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRING	evm.model.supercontig_127.8	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	3e-48	zinc finger protein 3

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_127.8

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Zhang A, et al. The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response. PLoS ONE, 2016. 11(12): p. e0168367 [PMID:27977750]