PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_126.16

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 203aa MW: 23383 Da PI: 10.3774

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_126.16	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.4	5.8e-16	11	57	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e r+ fskR++gil KA+E Sv Cd++ a+++fs+++k +y evm.model.supercontig_126.16 11 LETLKERHAKFSKRKKGILNKAKEFSVICDIDLALVMFSPSDKPVTY 57 5666789999******************************9998777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.016	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-20	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	7.94E-17	2	58	No hit	No description
SuperFamily	SSF55455	1.57E-18	2	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-13	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-16	15	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-13	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-13	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGKRKLVIKR LETLKERHAK FSKRKKGILN KAKEFSVICD IDLALVMFSP SDKPVTYFAH 60 DKDLGYFVEK MEKTSARDLE ERRESTNKLL KKIFQKNVEA EVDVRSFSAD GDDTVKVQEA 120 QLEEMKNRLD ERRKALEDFK NPRNVQDLNQ IKSMKEHLIT SLERIQKKKN RLLGKYQMER 180 VINASSGPGA VNLAHGTFGD KN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_126.16

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890718.1	1e-146	agamous-like MADS-box protein AGL30
TrEMBL	F8WLD6	3e-49	F8WLD6_CITUN; MADS-box protein
STRING	evm.model.supercontig_126.16	1e-145	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7330	18	38
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-23	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_126.16