PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1244.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 358aa    MW: 40332.3 Da    PI: 10.2258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1244.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31290347359
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  evm.model.supercontig_1244.3 290 DEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHS 347
                                   99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.2E-18241286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33276347IPR003657WRKY domain
PROSITE profilePS5081129.643283349IPR003657WRKY domain
SuperFamilySSF1182905.62E-27286347IPR003657WRKY domain
SMARTSM007744.5E-39288348IPR003657WRKY domain
PfamPF031063.3E-27290346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGVEEANRA AVESCHRVLT LLLKPHDQVQ QSNLMAETGE AVFKFKRVVS LLNSDLGHGR  60
VRKLKKFKSS LPPHIFLDSP SCTRILSPKP LQILPPNFFE KPIQEIDPKP KSLLQFSQKM  120
FLDNQSLDLT PSIKPPLQLT PIKPSQHYQF LHHQQQLKRL QMQQHQQVRY PAHDMIYSKN  180
NGGINLKFDG SSSCTPTISS NRSFMSSLSM DGSMTDLDGS CSSFHLIGMP QTSDQISQQS  240
RRRCSGRGED GSVKCASSGK CHCSKRRKLR LKRSIKVPAI SNKVADIPPD EFSWRKYGQK  300
PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDPSMLIVTY EGEHNHSRLL QTQSANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-192863461271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1244.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894273.10.0probable WRKY transcription factor 74
SwissprotQ93WU61e-124WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A061F1100.0A0A061F110_THECC; WRKY DNA-binding protein 21 isoform 1
STRINGevm.model.supercontig_1244.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-100WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]