PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

WRKY

Protein Properties

Length: 358aa MW: 40332.3 Da PI: 10.2258

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1244.3	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.8	1.6e-31	290	347	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ evm.model.supercontig_1244.3 290 DEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHS 347 99*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.2E-18	241	286	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.2E-33	276	347	IPR003657	WRKY domain
PROSITE profile	PS50811	29.643	283	349	IPR003657	WRKY domain
SuperFamily	SSF118290	5.62E-27	286	347	IPR003657	WRKY domain
SMART	SM00774	4.5E-39	288	348	IPR003657	WRKY domain
Pfam	PF03106	3.3E-27	290	346	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MEGVEEANRA AVESCHRVLT LLLKPHDQVQ QSNLMAETGE AVFKFKRVVS LLNSDLGHGR 60 VRKLKKFKSS LPPHIFLDSP SCTRILSPKP LQILPPNFFE KPIQEIDPKP KSLLQFSQKM 120 FLDNQSLDLT PSIKPPLQLT PIKPSQHYQF LHHQQQLKRL QMQQHQQVRY PAHDMIYSKN 180 NGGINLKFDG SSSCTPTISS NRSFMSSLSM DGSMTDLDGS CSSFHLIGMP QTSDQISQQS 240 RRRCSGRGED GSVKCASSGK CHCSKRRKLR LKRSIKVPAI SNKVADIPPD EFSWRKYGQK 300 PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDPSMLIVTY EGEHNHSRLL QTQSANT*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MEGVEEANRA AVESCHRVLT LLLKPHDQVQ QSNLMAETGE AVFKFKRVVS LLNSDLGHGR  60
VRKLKKFKSS LPPHIFLDSP SCTRILSPKP LQILPPNFFE KPIQEIDPKP KSLLQFSQKM  120
FLDNQSLDLT PSIKPPLQLT PIKPSQHYQF LHHQQQLKRL QMQQHQQVRY PAHDMIYSKN  180
NGGINLKFDG SSSCTPTISS NRSFMSSLSM DGSMTDLDGS CSSFHLIGMP QTSDQISQQS  240
RRRCSGRGED GSVKCASSGK CHCSKRRKLR LKRSIKVPAI SNKVADIPPD EFSWRKYGQK  300
PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDPSMLIVTY EGEHNHSRLL QTQSANT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	286	346	12	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1244.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021894273.1	0.0	probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-124	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A061F110	0.0	A0A061F110_THECC; WRKY DNA-binding protein 21 isoform 1
STRING	evm.model.supercontig_1244.3	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61
Representative plant	OGRP1817	15	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-100	WRKY DNA-binding protein 39

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1244.3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]