PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_124.41

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 187aa MW: 21200.2 Da PI: 9.2005

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_124.41	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	5e-11	14	64	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 + +Er+RR +++s ++L +l+P+ +ka +k ls e Le+A YIk+L evm.model.supercontig_124.41 14 KTVERNRRIHMKSLCFKLSSLIPSqHFKACDKEhLSQQEQLEHAATYIKEL 64 679*******************8888888888*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.85E-6	8	69	No hit	No description
PROSITE profile	PS50888	10.671	8	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-10	12	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-11	12	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-7	14	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MKKRSSDSSK LDRKTVERNR RIHMKSLCFK LSSLIPSQHF KACDKEHLSQ QEQLEHAATY 60 IKELRERIEE LKGRKEEAIM EESGRGKYRS NINDGGLSLP MVELRDMGSS IEVNVISGLN 120 KNFMSYQVIR ILQEEGADVV SASFNTVGDK IFHTFHAQVK ITRVGVETSR VSQRLEEMIC 180 LGSANI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_124.41

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890867.1	1e-135	transcription factor bHLH162-like
TrEMBL	A0A2C9VR57	1e-75	A0A2C9VR57_MANES; Uncharacterized protein
STRING	evm.model.supercontig_124.41	1e-134	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92
Representative plant	OGRP1345	11	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	8e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_124.41