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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_123.53 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
CO-like |
Protein Properties |
Length: 498aa MW: 54228.7 Da PI: 7.0701 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_123.53 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 19.2 | 2.6e-06 | 54 | 95 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg........H 37
++C++++ ++++ C +++ lC++C H g H
evm.model.supercontig_123.53 54 SQICDNCGTEPVSVRCATDNLVLCQECDWDAH-GtcsvsathH 95
579************************99999.5477777744 PP
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2 | CCT | 63.8 | 5.3e-22 | 448 | 492 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45
R +a++RYkeK+ktR+++K+irYesRKa+Ae+R+RvKGrFvk++e
evm.model.supercontig_123.53 448 RGNAMQRYKEKKKTRRYDKHIRYESRKARAETRKRVKGRFVKASE 492
7789**************************************975 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 498 aa
Download sequence Send
to blast |
MSWLKSDVKR TVPCDYCNQH SPVLYCRADS AKLCLFCDQH VHSANLLSRK HLRSQICDNC 60 GTEPVSVRCA TDNLVLCQEC DWDAHGTCSV SATHHRTQIQ GFSGCPSALE LASLWGLDLG 120 SKKPHELPPL IDNWTGCQDS VMPIDWWGYK SDGGGDGLSF QELVVPNERG MVCQGVKSGL 180 VEYTVSKKQS PNCGKHKQVI HKQLMELLKR ELMGHDGGGG ADDGGGGGGG ESTVPSTPKR 240 SNWATNAEDI GVENAGGDAG VGGQQQQSME HQTTPIMPLI TLPTQVGLRE DELLVGGDMV 300 WNTNVSGQNT QIWDFHLGQS RDHNSNQLED AYGTTDAGFM IKNFSELLTQ TSLTSAKMLG 360 DIYQMNCSIT HEDMASFSNK TTQQTTSQGP ATSESNNLPV ANGSAIGKNK TPSCSKEIHF 420 AEGSSFVKGN GTRVSATMAD LELLAQNRGN AMQRYKEKKK TRRYDKHIRY ESRKARAETR 480 KRVKGRFVKA SEAAPND*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G33500.2 | 3e-67 | B-box type zinc finger protein with CCT domain |