PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_12.67
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 483aa    MW: 51524.9 Da    PI: 8.2792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_12.67genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000657697223
                                 EETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                 +C+dCg++Fs+   +  H r H
  evm.model.supercontig_12.67 76 VCQDCGRVFSSGKAFGGHKRIH 97
                                 6**********99999999988 PP
2zf-C2H216.91.7e-05142163223
                                  EETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                  +C +Cgk F +   L  H+r H
  evm.model.supercontig_12.67 142 SCAICGKAFVSMKALFGHMRFH 163
                                  6*******************99 PP
3zf-C2H2188.1e-06416438123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  ++C++C+k+F++   L  H+r+H
  evm.model.supercontig_12.67 416 HQCNICNKTFRTGQALGGHMRRH 438
                                  79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.76475102IPR007087Zinc finger, C2H2
PfamPF139127.9E-67597IPR007087Zinc finger, C2H2
SMARTSM003551.67597IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.14E-77697No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576672.14E-7136163No hitNo description
PROSITE profilePS5015710.201141163IPR007087Zinc finger, C2H2
SMARTSM003550.053141163IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-5143164IPR007087Zinc finger, C2H2
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SuperFamilySSF576676.52E-7360382No hitNo description
PROSITE profilePS501578.912360387IPR007087Zinc finger, C2H2
PfamPF139127.6E-7360383IPR007087Zinc finger, C2H2
SMARTSM003551.5360382IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280362382IPR007087Zinc finger, C2H2
SuperFamilySSF576676.52E-7411438No hitNo description
Gene3DG3DSA:3.30.160.607.7E-4416438IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.4E-12416439IPR007087Zinc finger, C2H2
SMARTSM003550.0014416438IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972416438IPR007087Zinc finger, C2H2
PROSITE patternPS000280418438IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEKDQDQGKA KLPGVVGSGS GEKDKDFSTK SGISIKLKMP RRDSNEAAEG STPVADGGGG  60
GSAGSGGLSS NNQSRVCQDC GRVFSSGKAF GGHKRIHVQA AKKSQKLMNL VVNKNDLPNL  120
DRQLVLAGSK DHKKNGVEEE VSCAICGKAF VSMKALFGHM RFHPDRGWRG VHPPNDVGLK  180
AASSTSTLSD DRLHIDSSAT TGSVLDLKNL LEGWSVTGKR GRKAIPPASS ASGYGSGYGS  240
GSGSGSRSGS YGIQEEDRDD NDDRLDENDM DEAVKDLLIF ACGGSSQSDG NPKKKTAEEQ  300
KSSINGAGNK LNIKGDHTEL ESKDNGELNK MMKRKKKRRL CDLEREGEAV VTDQNNQGQH  360
ICITCNKPFP THQALGGHRS SHNKLKNNVA KEPTVSGLNQ ETVLSEDQEV STAANHQCNI  420
CNKTFRTGQA LGGHMRRHWT APTASAPAES QATSSSSEQQ QPTTRIVRNF DLNELPSQEA  480
DD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338KRKKKRR
2332339KRKKKRRL
3334338KKKRR
4334339KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_12.67
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905973.10.0zinc finger protein ZAT9
STRINGevm.model.supercontig_12.670.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Representative plantOGRP1379534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-25C2H2 family protein