PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_12.65
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 396aa    MW: 42828.3 Da    PI: 8.0744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_12.65genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000457899223
                                 EETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                 +C+dCg++F +   L  H r H
  evm.model.supercontig_12.65 78 VCQDCGRVFASGKALGGHRRIH 99
                                 6*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.3E-77799IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.28477104IPR007087Zinc finger, C2H2
SMARTSM003551.67799IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.86E-57899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-5323350No hitNo description
PfamPF139124.4E-8328351IPR007087Zinc finger, C2H2
PROSITE profilePS501578.85328355IPR007087Zinc finger, C2H2
SMARTSM003551.9328350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280330350IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MENDQDQDRE QANLQGVVGS GSGEKDKDFS TKDRLLIKLK LPRRESNEAA EGSTPMADAG  60
SGDSAGSGGL SRNNQSRVCQ DCGRVFASGK ALGGHRRIHV QAAKKSQKLI DLVANKNDLP  120
NHDRQLVLVE PTDNQNIGVD RGWRGIQPPN AVAKKAASSV STLSDDRLHL YSSANTGSVS  180
DLKDSLPRWL VTGKRGRKAL PPASSASGYG SGSGSRSGSY AIQEEDKNNN DDQLDENDMD  240
EAVKDLMIFA RGGSSQSDGN PKKKIAEEHK SSIKGAGNEL NIMGDQTEPK SKENVELNKT  300
MNMKKRRLCD QEREGEVVVT DQNNQVQHIC INCNKPFPTY QALGGHRSSH NKLKNDVSKE  360
PARSGLNQEI VLFEDRVVST AANHQCNICS KGSPQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_12.65
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905973.11e-149zinc finger protein ZAT9
STRINGevm.model.supercontig_12.650.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Representative plantOGRP1379534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-10C2H2 family protein