PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_12.292
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 582aa    MW: 63294 Da    PI: 8.0546
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_12.292genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-143784148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+ Ed +l++ v+ +G g+W+++ +  g+ R++k+c++rw ++l
  evm.model.supercontig_12.292 37 KGPWTAAEDAILAEHVRTHGEGNWNSVQKITGLARCGKSCRLRWANHL 84
                                  79******************************************9986 PP
2Myb_DNA-binding51.22.9e-1690133146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g++T+eE+ l+++++++lG++ W++ a+ ++ gRt++++k++w++
  evm.model.supercontig_12.292  90 KGAFTPEEERLIAELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 133
                                   799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2213284IPR017930Myb domain
SuperFamilySSF466891.01E-2836131IPR009057Homeodomain-like
SMARTSM007174.3E-123686IPR001005SANT/Myb domain
PfamPF002491.0E-133784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-223891IPR009057Homeodomain-like
CDDcd001675.11E-103984No hitNo description
PROSITE profilePS5129425.05385139IPR017930Myb domain
SMARTSM007178.5E-1689137IPR001005SANT/Myb domain
PfamPF002491.8E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2592138IPR009057Homeodomain-like
CDDcd001672.85E-1192133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MIPYGIGETN ASGSSRSSGE IGGGGAEGGV GKVILKKGPW TAAEDAILAE HVRTHGEGNW  60
NSVQKITGLA RCGKSCRLRW ANHLRPNLKK GAFTPEEERL IAELHAKLGN KWARMAAQLP  120
GRTDNEIKNY WNTRVKRRQR QRLPLYPPDI EPTYQQEGQQ QPFYHCHQQQ QPQQQPHSQP  180
MTPISPLSSS APTTPSSSSF TFQTHLLPHS PTPTTPNPPS PLTPPPVSPA LSSPHNFPTL  240
SLFGNGTNSP LSTATTPTSN AIISPFFFPR APPLLQTPLR LRRLQHETAT NTTTTPPLTP  300
NNNTTNTGCN GFMLPFSSLI NESSFTSLVT RHSSCPTTPT DAISPQLPLL GSPTVPSYSL  360
SNSPLTFGPG SPQMLRGGQQ HMVPTTDSIF PMKTELPSSQ LLSQNSFSEW ALDAKLKKNS  420
RKKKMMLGIR PCSTGLLEDL LSESQNFGGE SSHENMKRRH ILELEEDKPG LGGFGSWSDT  480
TSISLSSDIG FKQKEEVPTQ INTLHEDLTK LINGVPSMRV PDQWYNDTGD QISNGQQSSV  540
VTDDNLGIDL QQIASLFPVD PATEPGRNTG SCSWDNLPGI C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-303513825127MYB TRANSFORMING PROTEIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_12.292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906038.10.0transcription factor MYB120-like
STRINGevm.model.supercontig_12.2920.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99391934
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.11e-64myb domain protein 120