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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_12.251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 25954.6 Da PI: 8.2925 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.4e-21 | 32 | 82 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g evm.model.supercontig_12.251 32 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARSLRG 82 68********.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.43E-18 | 32 | 91 | No hit | No description |
Pfam | PF00847 | 9.2E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.696 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 33 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MRRGRGAAAA SAVAAAAAAK PVTDQNGSVK EPRYRGVRKR PWGRFAAEIR DPWKKTRVWL 60 GTFDSAEDAA RAYDAAARSL RGPKAKTNFP IGCGSRHPCS FPYPSPHNNN NNNNDNNHGD 120 PFMDHRLYGA GSFPEHQIVN PQRPTTSSMS STVESFSGPR PPSSAANHQA TTTAGRRYPR 180 TPPVVPEDCH SDCDSSSSVV DDGDDIASSS CRKQPLPFDL NFPPLDDFAG DDLQCTALCL 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 30 | 95 | 2 | 68 | ATERF1 |
3gcc_A | 1e-20 | 30 | 95 | 2 | 68 | ATERF1 |
5wx9_A | 2e-20 | 23 | 90 | 1 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00366 | DAP | Transfer from AT3G20310 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_12.251 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906162.1 | 1e-177 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 3e-68 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A068BGH5 | 3e-86 | A0A068BGH5_JATCU; C-repeat binding transcription factor 2 | ||||
STRING | evm.model.supercontig_12.251 | 1e-177 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 9e-41 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_12.251 |
Publications ? help Back to Top | |||
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