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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_12.22 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
MYB |
| Protein Properties |
Length: 365aa MW: 40344.9 Da PI: 7.4098 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_12.22 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lvd++++ G g W++ ++ g++R++k+c++rw +yl
evm.model.supercontig_12.22 18 KGPWTAEEDQKLVDYIQKNGHGKWRLLPKNAGLKRCGKSCRLRWTNYL 65
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 50.7 | 4.3e-16 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ eE+e + +++ lG++ W++Ia++++ gRt++++k++w+++
evm.model.supercontig_12.22 71 RGKFSLEEEETITHLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 115
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MGKPQSGDKS GNNGVLKKGP WTAEEDQKLV DYIQKNGHGK WRLLPKNAGL KRCGKSCRLR 60
WTNYLRPDIK RGKFSLEEEE TITHLHSVLG NKWSAIAARL PGRTDNEIKN YWNTHIKKKL 120
LRMGIDPVTH APRLDLLDLS SILTSSLLNS TQFHPSLLGI ASLDPAILSL ATTFLSTQRL 180
QGLQDQNHLC NNTTTTHIQN HYGFFFHENQ LQTQNSIQPC TASSDHDSST TQLFLDENQI 240
INNHHQPSLN QFSTRQVTDL TCQNSLSWQG NNGEIPSNYI HDPVTSYGGN SYHENYNSKL 300
PGSCGNLSFA SLLSSTPSSS STPLHSSCTA AYVNGGSEDD KDSYCSNLLM FDIPSTGLNV 360
DGCL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4 | 28 | 2646 |
| Representative plant | OGRP5 | 17 | 1784 |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615] - Zhu L,Guo J,Ma Z,Wang J,Zhou C
Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
Biomolecules, 2019.
[PMID:29880735]
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