PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_12.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 523aa MW: 56992.8 Da PI: 6.8038

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_12.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	7.8e-06	359	397	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L evm.model.supercontig_12.1 359 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 397 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.874	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.80E-7	358	401	No hit	No description
SuperFamily	SSF47459	2.62E-11	358	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0049	359	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-9	362	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MADEFNTSTN WWDSSRNRFD SGSSSSSSGI NSLGGSFGWP TEMVDIKARS SMDSVSVSGS 60 SVVFQDTQKL QGSDSGGDHL HMMGLGLSSP AMDWNQALLR GDKAEPSFRS LLQDSNSTTP 120 YHQQEIGHMG SSSTTTSSQV QWREKMFAGG VSSGDSSSAN EFKQLNRGFS LDQSQFSPHG 180 SSSDSTVTCQ GLPSSFQIDN SAGIYGSQAS SILQGLLGSD NQPPPQPQPS SFENRALNYN 240 QYTNYAMNPN ELMANSWPKI PQFLRNSPPK QPSHSHLHFS NNAPFWNAPA TAMNDVRSSF 300 FPSLQPQFSN PNFEEKPKNI SEVRESSSVV KKNGSESSNP ASNKRARSET ASPLPAFKVR 360 KEKMGDRITA LQQLVSPFGK TDTASVLSEA IEYIKFLHEQ VTVLSTPYMK SGAASLQHQQ 420 QQSSEKSLKV DSDHQGPKQD LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGTFRSEQKT 480 YRRLMGNSKE EDNPSKRENG IVGPASGMMM MMQDFGAAVM GP*

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MADEFNTSTN WWDSSRNRFD SGSSSSSSGI NSLGGSFGWP TEMVDIKARS SMDSVSVSGS  60
SVVFQDTQKL QGSDSGGDHL HMMGLGLSSP AMDWNQALLR GDKAEPSFRS LLQDSNSTTP  120
YHQQEIGHMG SSSTTTSSQV QWREKMFAGG VSSGDSSSAN EFKQLNRGFS LDQSQFSPHG  180
SSSDSTVTCQ GLPSSFQIDN SAGIYGSQAS SILQGLLGSD NQPPPQPQPS SFENRALNYN  240
QYTNYAMNPN ELMANSWPKI PQFLRNSPPK QPSHSHLHFS NNAPFWNAPA TAMNDVRSSF  300
FPSLQPQFSN PNFEEKPKNI SEVRESSSVV KKNGSESSNP ASNKRARSET ASPLPAFKVR  360
KEKMGDRITA LQQLVSPFGK TDTASVLSEA IEYIKFLHEQ VTVLSTPYMK SGAASLQHQQ  420
QQSSEKSLKV DSDHQGPKQD LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGTFRSEQKT  480
YRRLMGNSKE EDNPSKRENG IVGPASGMMM MMQDFGAAVM GP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_12.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021905804.1	0.0	transcription factor bHLH123 isoform X2
Swissprot	Q8GXT3	8e-97	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2I4H7L4	0.0	A0A2I4H7L4_JUGRE; transcription factor bHLH123-like isoform X2
STRING	evm.model.supercontig_12.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53
Representative plant	OGRP3135	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-70	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_12.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]