PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB

Protein Properties

Length: 292aa MW: 32769.6 Da PI: 9.1579

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_119.55	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+d++k+ G g+W+t +++ g+ R++k+c++rw +yl evm.model.supercontig_119.55 24 RGPWTPEEDELLADYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 71 89****************************99**********97 PP
2	Myb_DNA-binding	47.2	5.2e-15	82	122	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l evm.model.supercontig_119.55 82 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 122 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-22	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.974	19	71	IPR017930	Myb domain
SuperFamily	SSF46689	2.68E-29	21	118	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-14	23	73	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-16	24	71	IPR001005	SANT/Myb domain
CDD	cd00167	1.70E-11	26	71	No hit	No description
PROSITE profile	PS51294	24.397	72	126	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-24	74	127	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	76	124	IPR001005	SANT/Myb domain
CDD	cd00167	2.64E-11	82	122	No hit	No description
Pfam	PF00249	8.6E-14	82	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MKNPVGGKID GNTTPCCSKV GLKRGPWTPE EDELLADYIK KEGEGRWRTL PKKAGLLRCG 60 KSCRLRWMNY LRPSVKRGQI APDEEDLILR LHRLLGNRWS LIAGRIPGRT DNEIKNYWNT 120 HLSKKLISQG IDPRTHKPFL HYQSQNSSSL PANYKPPSSS SSSRPKRKQH KQHLRQLSRH 180 YSNKPNNDNT NTDPVLLSSS SAETCNADNG GTSTRHEDDR VMTKETGYEF NGGGGPLVDH 240 GHSSLMNYEE DSVMIMKSNN GEDKEGSFCN EDIFSSFLNS LINEDPFASQ V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-25	22	126	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_119.55

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021891129.1	0.0	transcription repressor MYB5
Swissprot	Q38850	6e-81	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A061EW76	1e-100	A0A061EW76_THECC; Myb domain protein 5 isoform 1
TrEMBL	A0A061F2Z9	1e-100	A0A061F2Z9_THECC; Myb domain protein 5 isoform 2 (Fragment)
TrEMBL	M5VYH3	1e-100	M5VYH3_PRUPE; Uncharacterized protein
STRING	evm.model.supercontig_119.55	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	8e-81	myb domain protein 5

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_119.55

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]