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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_118.25 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
C3H |
Protein Properties |
Length: 421aa MW: 45751.6 Da PI: 7.6301 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_118.25 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 36.2 | 1e-11 | 166 | 190 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C ++++t tCk+Gd+CkF H+
evm.model.supercontig_118.25 166 GEKDCAHYMQTRTCKFGDSCKFDHP 190
7889********************8 PP
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2 | zf-CCCH | 27.9 | 4.1e-09 | 216 | 242 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C++f++t Ck+G +C+F+H++
evm.model.supercontig_118.25 216 PGQPDCPYFMKTQRCKFGFKCRFNHPR 242
5789*********************96 PP
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3 | zf-CCCH | 35.7 | 1.5e-11 | 262 | 287 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C f+++tG+Ck+G++CkF+H++
evm.model.supercontig_118.25 262 FEPQCAFYMKTGQCKFGPTCKFHHPK 287
6789********************96 PP
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4 | zf-CCCH | 38.8 | 1.5e-12 | 333 | 358 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+f+++tG CkyG++C+++H+
evm.model.supercontig_118.25 333 PGEVDCPFYLKTGSCKYGATCRYNHP 358
57899********************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.742 | 164 | 192 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 164 | 191 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-6 | 165 | 191 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 166 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 170 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 215 | 243 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-4 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-6 | 217 | 242 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 220 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 221 | 243 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.38 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 262 | 287 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-5 | 265 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 266 | 286 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-7 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-10 | 334 | 358 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 338 | 357 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MANQLYGYES ATTKSAAAAA AKAKSTLSSL FGTTRSRSET YLSDTTLRYL SAGSDSLVSD 60 LTSKYSSIGT SSTMYHHLAQ TASLLASSQQ HQATWPPGVD VPPAPGVEPL LPPGVKRSSD 120 VLYHPTLLGA HDTIGQSEAW YTTTSFAKRY RLESTSHLPI YPQRPGEKDC AHYMQTRTCK 180 FGDSCKFDHP IWVPEGGIPD WKEVPLPSGS ELPERPGQPD CPYFMKTQRC KFGFKCRFNH 240 PRDKLETVGA TENPGALPER PFEPQCAFYM KTGQCKFGPT CKFHHPKDIQ ILAAGQENGN 300 GEQTGSAFKS EGANAVTFSP ALYQNTKGLP IRPGEVDCPF YLKTGSCKYG ATCRYNHPDR 360 NAFIPPAAIG AMVASSATNL NIGVVSPATS IYQTIDPRLA QPMEQILVDL SCWVLLEGDC 420 *
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Functional Description ? help
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Source |
Description |
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB024033 | 9e-72 | AB024033.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21. |
GenBank | CP002686 | 9e-72 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |