PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_118.23

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C3H

Protein Properties

Length: 160aa MW: 18254.9 Da PI: 8.9653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_118.23	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	44.8	2e-14	84	109	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++++tG+Ck+G+rCkF H+ evm.model.supercontig_118.23 84 PGQAECDYYMKTGECKFGERCKFDHP 109 5789*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.1E-7	83	110	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	83	111	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.23E-7	83	112	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.6E-12	85	109	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-6	89	109	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MAMCRVEKEE VIRAIEGRRR EQNNNRTNKI IIEENDMDKE LTTLHIAINY GVRMMQRIRQ 60 QSEMFIYVKP DVLGVAPAIY PQRPGQAECD YYMKTGECKF GERCKFDHPI DRTLSLSKQA 120 CQLSIKLTLA GLPRRENDAI EARNSGKKDA YSKSGGTSH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_118.23

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	evm.model.supercontig_118.23	1e-116	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21248	5	5
Representative plant	OGRP1247	17	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	4e-28	floral homeotic protein (HUA1)

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_118.23