PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_117.75
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 339aa    MW: 39793.7 Da    PI: 4.6412
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_117.75genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.19.7e-1840118285
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                                   W+ +evlaL+++r++me+++ +       We+vs+k +e gf+rs+++Ckek+e+ + ++ +i++++++ t+ + s  ++ 
  evm.model.supercontig_117.75  40 WSSDEVLALLRIRSSMENWFPEF-----SWEHVSRKFAELGFKRSAEKCKEKFEEESSYFNNINHNQNNYTKINGSYRVFS 115
                                   ********************998.....8**************************************99988777666666 PP

                      trihelix  83 dql 85 
                                   d+l
  evm.model.supercontig_117.75 116 DDL 118
                                   666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1138106No hitNo description
PROSITE profilePS500906.1443991IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVVGLDLEME GGIITSNIPT DHHHHHHHHH QLGDQDHQPW SSDEVLALLR IRSSMENWFP  60
EFSWEHVSRK FAELGFKRSA EKCKEKFEEE SSYFNNINHN QNNYTKINGS YRVFSDDLEE  120
LYTEHDDHVD DDNHQHVVNV ERNETVEEKP SEEEDKSPRQ DNLNDNYKDQ DDQTAEIKIN  180
PSGIDDDIKS RKRKREEEQK KKKIKEEEFE MFKGFCEEIV KNMMIQQEEM HNKLLEDMVK  240
RDEEKVAREE IWKKKEIERI NEELELRAQE QAISGTLVVP SPSGGGSEDL PTLRQKNSDS  300
PETLPPVTWQ DDSNVHPILH VPQSEKSVVQ IPSYDFDF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_117.75
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891239.11e-144trihelix transcription factor GTL2-like
SwissprotQ8H1816e-44GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLF6HTS82e-69F6HTS8_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_117.750.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.16e-18Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]