PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_117.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19440.9 Da PI: 10.7146 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.8 | 7.9e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+ r+vtf kR +g+lKK +EL +LC++++ vii+ + evm.model.supercontig_117.23 10 FIVNDKARKVTFNKRMKGLLKKLSELTILCGVNAGVIIYNP 50 799***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.7E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.185 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.49E-22 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.54E-24 | 3 | 85 | No hit | No description |
Pfam | PF00319 | 8.6E-17 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MVRKKIKIAF IVNDKARKVT FNKRMKGLLK KLSELTILCG VNAGVIIYNP YSMKLEVWPS 60 AMGVQQVLTD FNNISEINRN KKMVNQGVFL EEGIKKMNDQ VEKQHKKNRE NEIMQLLFKH 120 LTGKSANNTN KRDLKELGFL IQRLLKNIQE VKDKLIKASR DVQGAGEDV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 25 | RKKIKIAFIVNDKARKVTFNKRMK |
2 | 16 | 31 | RKVTFNKRMKGLLKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_117.23 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006382260.2 | 7e-52 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | U5GF69 | 7e-51 | U5GF69_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_117.23 | 1e-118 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-37 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_117.23 |