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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_116.88 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 26656.7 Da PI: 5.8436 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + Fs++ L H++ H evm.model.supercontig_116.88 108 FSCNYCQRKFSTSQALGGHQNAH 130 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 106 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.39E-6 | 106 | 135 | No hit | No description |
PROSITE profile | PS50157 | 11.801 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MMKPIIDLEV EANSENDSDV CSQVASNLSM HETSYSAAAA PSNESLSIRS SLANPESNPQ 60 RVCLNLALYF NSNEPETRDS AGLAVSSTSE SSNEPALRTT AAAIPRVFSC NYCQRKFSTS 120 QALGGHQNAH KRERSLAKRA MRYANLASLP FTATPFRSLG IKAHSSVHQN LAIPIRPNEI 180 RSGARFEHEY HFGLPIFLEE EQGEMLWPGS FREVADHQAA GNSSLNFMEV NLEDSAPDLT 240 LKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_116.88 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021891400.1 | 1e-179 | zinc finger protein 4-like | ||||
TrEMBL | U5FH75 | 5e-94 | U5FH75_POPTR; C2H2 family protein | ||||
STRING | evm.model.supercontig_116.88 | 1e-179 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6672 | 26 | 43 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-40 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_116.88 |