PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_116.48

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

GeBP

Protein Properties

Length: 288aa MW: 32241.8 Da PI: 9.5212

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_116.48	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	63.4	5.4e-20	44	135	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 +++r+w++ Dei++L+Gl++ g s +d+ fy+ +++s+s +s sql++K+rrL+ Kf+ +++ + g +ps+ + evm.model.supercontig_116.48 44 KSHRIWTDPDEISFLKGLLQS----GLSFPKDLPLFYRRFSSSMSKPYSYSQLSDKLRRLRGKFRLLSSRLSCGLQPSLLS 120 578***************87....9999************************************************* PP DUF573 83 ehdqkifelskkiWg 97 +h + f ls ++W evm.model.supercontig_116.48 121 PHHRALFRLSAQLWS 135 ************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.4E-21	46	135	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDMESNPSLL KPSASKSKLP IKRKNPEPDP INSPLPAKKT PPFKSHRIWT DPDEISFLKG 60 LLQSGLSFPK DLPLFYRRFS SSMSKPYSYS QLSDKLRRLR GKFRLLSSRL SCGLQPSLLS 120 PHHRALFRLS AQLWSSDFAS SSPFDFRHPT PPPADDLIPT HTHAPIQFSF LPDVHRGSSD 180 PDHDADRDRA CDGKMSEMHV ECDLGHGDGG GGFVGAIARS ALNVFDECLK DVLAKQGLIC 240 LDNRKIQGGE TKDMETRWRE QRLAEVDVFR RRLRLVLDNS LNGSLIV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_116.48

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021891339.1	0.0	uncharacterized protein LOC110809740
TrEMBL	A0A2C9WLE5	5e-72	A0A2C9WLE5_MANES; Uncharacterized protein
STRING	evm.model.supercontig_116.48	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18042	8	9
Representative plant	OGRP9800	9	12

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_116.48