PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_115.71

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 248aa MW: 28449.3 Da PI: 4.9993

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_115.71	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.1e-13	57	99	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR++++++++ Lr+++P+ + K++Ka+i + A++YI++L evm.model.supercontig_115.71 57 VSERNRRNKLRDRLFALRSVVPNiS------KMDKASIIKDAIDYIQEL 99 57*******************66......**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.221	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-17	52	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.21E-13	53	104	No hit	No description
SMART	SM00353	2.0E-14	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	56	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-10	57	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MENIDEEYTN WWETKRFYQN EEFEYDSAWG MDVPLSMYYD SSSPDGGAST AASKNIVSER 60 NRRNKLRDRL FALRSVVPNI SKMDKASIIK DAIDYIQELH EQERRIQTEI MELETGKLKR 120 NNNPGFDYEQ DLPVLLRPKK IKHQFYDCGG SKASPIENLE LKVMFMAEKT AVVSLTCSRK 180 TDTMVKLCEA FESLKLKIIT ANIVAFSGLL SKTVFIEAEE EEREHLRIKI ETAIAALNDP 240 QSPMSTQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_115.71

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021891461.1	0.0	transcription factor bHLH35-like
Swissprot	Q2HIV9	7e-94	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A2C9UP10	1e-127	A0A2C9UP10_MANES; Uncharacterized protein
STRING	evm.model.supercontig_115.71	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6367	27	45
Representative plant	OGRP2753	13	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	2e-89	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_115.71