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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_115.10 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
HB-other |
Protein Properties |
Length: 348aa MW: 39613.3 Da PI: 4.8253 |
Description |
HB-other family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_115.10 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 31.8 | 2.4e-10 | 278 | 325 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
+++k qle+Le+++++++ p+ +++ + + ++L+ ++V WF rR+
evm.model.supercontig_115.10 278 RLKKVQLETLERVYKRSKRPTNAMISSIVQVTNLPRKRVLKWFEDRRT 325
57899******************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0002229 | Biological Process | defense response to oomycetes |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009682 | Biological Process | induced systemic resistance |
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway |
GO:0010118 | Biological Process | stomatal movement |
GO:0050832 | Biological Process | defense response to fungus |
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway |
GO:2000071 | Biological Process | regulation of defense response by callose deposition |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MAFPLSLNTS VAFKCLPSFS SSSHGERLLF FCSRNTNPVL PRHSPSRLVL ALARRRNQNS 60 AVASDSSDKK KKKKSFARQS TEEEEEDLDD DPFEALFSQL EEDLKNDTGS VDDDDDEINE 120 EDINALAREL EEALRDGDGL EMFKLAAESD NDEAPYDDDG DNDAYEDEDD EKPVKLKNWQ 180 LRRLAYALKA GRRKTSIKNL AAELCLDRSF VLEMLRDPPP NLVMMSAALP DKPPTTTIPE 240 ANPPETISAE SVGDTIEPET KKEEPIHVMQ QRWSAQKRLK KVQLETLERV YKRSKRPTNA 300 MISSIVQVTN LPRKRVLKWF EDRRTEDGVP DHHRPYRRPV PETIFSK*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 53 | 73 | RRRNQNSAVASDSSDKKKKKK |
Functional Description ? help
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Source |
Description |
UniProt | May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}. |
Publications
? help Back to Top |
- García-Andrade J,Ramírez V,López A,Vera P
Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]
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