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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_114.62 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
WRKY |
| Protein Properties |
Length: 465aa MW: 51283.8 Da PI: 8.1149 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_114.62 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 104.8 | 4.6e-33 | 194 | 250 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k
evm.model.supercontig_114.62 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGEHNHPK 250
9***************************************.***************85 PP
|
| 2 | WRKY | 105.7 | 2.4e-33 | 390 | 448 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDg++WrKYGqK+vkg+++prsYYrCts +C+v+k+ver+++dp ++++tYeg+Hnh+
evm.model.supercontig_114.62 390 LDDGFRWRKYGQKHVKGNPYPRSYYRCTSLKCNVRKHVERASDDPVAFITTYEGKHNHD 448
59********************************************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009957 | Biological Process | epidermal cell fate specification |
| GO:0010214 | Biological Process | seed coat development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MEIKEAERVV IAKPVPSRPT CSSFRSFSEL LAGAINVSPF TTSSENTIAA IRPKTVRFKP 60
IVNHTPSRDN SSQADFSETA VCNLSVTKTD SKTNVLYKPQ AKLVSKATVS LLANMGNFST 120
NSHQVMQLAH ARAQNSNQDK HNFMSRFCSN MHQCIPSHTE AELTIGNSKT AAQNLEEDQK 180
TSSVVVSSDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSFDGQIAEI 240
VYKGEHNHPK PPPPKRSSSG TQGLVLASEG SAQDGNISLP NNQLNERTEG SEGRVENQNE 300
MGLSCFQGRY PPAYEPTAAG TIHVGTGNSE NSLGLSGECE EGSKVVEGDD DEPRSKRRKN 360
ENQSNEAGLL GESVQDPHVI VHGSTDSEIL DDGFRWRKYG QKHVKGNPYP RSYYRCTSLK 420
CNVRKHVERA SDDPVAFITT YEGKHNHDMP MRNTTNPVAS EPDS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
| Publications
? help Back to Top |
- Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
Bioinformatics, 2012. 28(6): p. 815-22
[PMID:22271267] - Simon M, et al.
Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
Plant Cell, 2013. 25(9): p. 3175-85
[PMID:24014549] - Ranocha P,Francoz E,Burlat V,Dunand C
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
Plant Signal Behav, 2014. 9(11): p. e977734
[PMID:25531128] - Verweij W, et al.
Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
Plant Cell, 2016. 28(3): p. 786-803
[PMID:26977085] - Gonzalez A, et al.
TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
Dev. Biol., 2016. 419(1): p. 54-63
[PMID:27046632] - Hassani-Pak K, et al.
Developing integrated crop knowledge networks to advance candidate gene discovery.
Appl Transl Genom, 2016. 11: p. 18-26
[PMID:28018846]
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