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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_112.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C3H | ||||||||
Protein Properties | Length: 483aa MW: 52722.9 Da PI: 6.1918 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.7e-07 | 272 | 292 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg evm.model.supercontig_112.6 272 PCPEFRK-GSCRQGDACEYAHG 292 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 5.1E-17 | 28 | 175 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.52E-15 | 28 | 150 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 5.0E-4 | 72 | 102 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.202 | 72 | 147 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF13637 | 4.3E-10 | 73 | 131 | No hit | No description |
CDD | cd00204 | 4.05E-9 | 74 | 147 | No hit | No description |
SMART | SM00248 | 0.067 | 107 | 139 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.434 | 107 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.0E-4 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 270 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.662 | 272 | 294 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-4 | 272 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-4 | 300 | 330 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 302 | 325 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.174 | 302 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MCSGSKRKPT QTGYIMEGKE DGFSFNFSVL LEFAAANDLT GFKTAIEEMG LDIDKSTLWY 60 GRRIGSKKMA FEERTPLMIA AMFGSKDVLN YIIESGGVDV NRVCGSDGAT ALHCAAAGGS 120 AASPEVVKVL LAASADASVL DASGNRPGDL IAPVCDLAFS SRKKTLEVLL KGASGVEETY 180 DLPDKVVNET DVQEQLEIST PKVSEKKEYP VDLTLPDIKN GIYGTDEFRM YTFKVKPCSR 240 AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGS CRQGDACEYA HGIFECWLHP 300 AQYRTRLCKD ETNCTRRVCF FAHKPEELRP LYTSTGSGVP SPRSYSASGS SLDLGSISPL 360 ALDSPSVIIP PTSTPPLTPS GASSPRGGNM WQTQSSFVPP TLQLPGSRLK SAISARDMDL 420 DIDLLNLESQ RRRQQQQQQL IDEISGLSSP SSWNNGFTSA SSFSPSVDRS GELNRLXXXX 480 XX* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_112.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021891740.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1R3J6F0 | 0.0 | A0A1R3J6F0_9ROSI; Zinc finger, CCCH-type | ||||
STRING | evm.model.supercontig_112.6 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-162 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_112.6 |