PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1117.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 306aa MW: 34108.7 Da PI: 9.3652

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1117.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.3	2.6e-36	56	112	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 e+ lkcprCdstntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ evm.model.supercontig_1117.2 56 ESPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKR 112 5789***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	56	112	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	58	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.521	59	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	61	97	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGLSSKQVSS DDHGLDWNQT LLQATTTSEF PKASSSLKRQ HPQNNQSNNN QQKVAESPLK 60 CPRCDSTNTK FCYYNNYNKS QPRHFCKTCK RHWTKGGTLR NVPVGGGRKN KRLKTSNDTV 120 STATNGKISN KLGYMGIRNQ ELPNLGFNDQ KTLSDMLYRR MIQPAKSPLQ NSTMFVGSSS 180 NSLTLSPLNA HHHHHHHHHH QALHFPFSSS SSSSFETNPS SVSTSLHSST LYNLTTGDEQ 240 TKGNDVVPTI TSMLMPTTTV LAQSWQSQSA TASMEIGNYW NWDDIDTFVS THDLNIPWDD 300 SDIKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1117.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021895858.1	0.0	dof zinc finger protein DOF5.6-like
TrEMBL	A0A2C9U4V3	3e-87	A0A2C9U4V3_MANES; Uncharacterized protein
STRING	evm.model.supercontig_1117.2	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-31	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1117.2