PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_111.22
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 341aa    MW: 38574.7 Da    PI: 8.8454
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_111.22genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.21.3e-56151411129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeel+++yL+kkv g ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++g
  evm.model.supercontig_111.22  15 LPPGFRFHPTDEELISHYLHKKVIGMNFSA-RAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDAG 94 
                                   79**************************99.89***************888999*************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   yWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wvmheyrle
  evm.model.supercontig_111.22  95 YWKATGKDKEIYR-GKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 141
                                   *************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6511165IPR003441NAC domain
PROSITE profilePS5100560.48515165IPR003441NAC domain
PfamPF023651.9E-2916140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MERNVSGKED DQMDLPPGFR FHPTDEELIS HYLHKKVIGM NFSARAIGEV DLNKSEPWEL  60
PWKAKMGEKE WYFFCVRDRK YPTGLRTNRA TDAGYWKATG KDKEIYRGKS LVGMKKTLVF  120
YKGRAPKGEK TNWVMHEYRL EGKYSVHNLP KTAKNEWVIC RVFQKSCGGK KIHISGLVKM  180
SSFGNELGIS GLPPLTDSLP YNPKTKAFAE SAYVPCFSNN PIDVRTNQNQ FNNPLVANQF  240
DTFPFSSNSF YSPQTLQLPG GSVLIQDQSL LKALIENHGQ TTERDKMISA SQETGLSTEI  300
NNEISSVMSN LEMGKRSFGD QQHPPSTSTQ PVDLDCFWSY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-571217117174NAC domain-containing protein 19
3swm_B8e-571217117174NAC domain-containing protein 19
3swm_C8e-571217117174NAC domain-containing protein 19
3swm_D8e-571217117174NAC domain-containing protein 19
3swp_A8e-571217117174NAC domain-containing protein 19
3swp_B8e-571217117174NAC domain-containing protein 19
3swp_C8e-571217117174NAC domain-containing protein 19
3swp_D8e-571217117174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_111.22
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021891877.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-156NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1R3KWZ00.0A0A1R3KWZ0_COCAP; No apical meristem (NAM) protein
STRINGevm.model.supercontig_111.220.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-158NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]