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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_111.11 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
Dof |
| Protein Properties |
Length: 476aa MW: 51694.9 Da PI: 7.9299 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_111.11 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 126.5 | 8e-40 | 126 | 186 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss
evm.model.supercontig_111.11 126 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 186
7899******************************************************987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 476 aa
Download sequence Send
to blast |
MQDPAITLFG KKIQLPADGE IPTLSGDDSD SPITIGLEKE MSGRDGEEEE KLDKDSLTQK 60
AISAPQQDDT KPVNKEESTT TESLPESGVN PETQSVDEET GKSKTAKAEK AKNDLSNSQE 120
KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR 180
KNKNSSSHYR HITISEALQA ARIDVPNGVN QHALKSNGRV LSFGLDAPIC DSMASVLKLR 240
NKKTLNGGRN GFSNVEEQKI PGPCRGGENG DDCSSGSSIT VSNSMEEGGR NCAQEPLMRS 300
INGFPSSIPC LPGVPWPYPW NSIPPPGFCP SGYPMSFYPT GYWNCAIPGA WNAPWLSPQP 360
STTCSNQNGP SSPLGKHSRE GETLKRDELE KEEPPKQKNG SVLVPKTLRI DDPTEAAKSS 420
IWATLGIKNE SLSRGGLFKA FQPKKNEKNH VAEASPVLCA NPAALSRSLK FHESS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Corrales AR, et al.
Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
Plant Cell Environ., 2017. 40(5): p. 748-764
[PMID:28044345] - Renau-Morata B, et al.
Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions.
Front Plant Sci, 2017. 8: p. 660
[PMID:28515731] - Henriques R, et al.
The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.
New Phytol., 2017. 216(3): p. 854-867
[PMID:28758689]
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