PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_111.11

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 476aa MW: 51694.9 Da PI: 7.9299

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_111.11	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8e-40	126	186	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss evm.model.supercontig_111.11 126 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSS 186 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	119	183	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-32	128	184	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MQDPAITLFG KKIQLPADGE IPTLSGDDSD SPITIGLEKE MSGRDGEEEE KLDKDSLTQK 60 AISAPQQDDT KPVNKEESTT TESLPESGVN PETQSVDEET GKSKTAKAEK AKNDLSNSQE 120 KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR 180 KNKNSSSHYR HITISEALQA ARIDVPNGVN QHALKSNGRV LSFGLDAPIC DSMASVLKLR 240 NKKTLNGGRN GFSNVEEQKI PGPCRGGENG DDCSSGSSIT VSNSMEEGGR NCAQEPLMRS 300 INGFPSSIPC LPGVPWPYPW NSIPPPGFCP SGYPMSFYPT GYWNCAIPGA WNAPWLSPQP 360 STTCSNQNGP SSPLGKHSRE GETLKRDELE KEEPPKQKNG SVLVPKTLRI DDPTEAAKSS 420 IWATLGIKNE SLSRGGLFKA FQPKKNEKNH VAEASPVLCA NPAALSRSLK FHESS*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MQDPAITLFG KKIQLPADGE IPTLSGDDSD SPITIGLEKE MSGRDGEEEE KLDKDSLTQK  60
AISAPQQDDT KPVNKEESTT TESLPESGVN PETQSVDEET GKSKTAKAEK AKNDLSNSQE  120
KTLKKPDKIL PCPRCNSMDT KFCYYNNYNI NQPRHFCKAC QRYWTAGGTM RNVPVGAGRR  180
KNKNSSSHYR HITISEALQA ARIDVPNGVN QHALKSNGRV LSFGLDAPIC DSMASVLKLR  240
NKKTLNGGRN GFSNVEEQKI PGPCRGGENG DDCSSGSSIT VSNSMEEGGR NCAQEPLMRS  300
INGFPSSIPC LPGVPWPYPW NSIPPPGFCP SGYPMSFYPT GYWNCAIPGA WNAPWLSPQP  360
STTCSNQNGP SSPLGKHSRE GETLKRDELE KEEPPKQKNG SVLVPKTLRI DDPTEAAKSS  420
IWATLGIKNE SLSRGGLFKA FQPKKNEKNH VAEASPVLCA NPAALSRSLK FHESS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_111.11

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021891866.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-122	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A067ENU3	0.0	A0A067ENU3_CITSI; Uncharacterized protein
STRING	evm.model.supercontig_111.11	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-115	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_111.11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]