PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ERF

Protein Properties

Length: 229aa MW: 25504.8 Da PI: 5.3838

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_109.32	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.1e-19	66	117	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr ++ +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++ a+++++ge evm.model.supercontig_109.32 66 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFPTPEMAARAHDVAALCIKGE 117 68***998.******843...6**********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.8E-13	66	117	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-31	67	125	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-21	67	125	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.064	67	124	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-35	67	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	68	79	IPR001471	AP2/ERF domain
CDD	cd00018	5.29E-32	68	124	No hit	No description
PRINTS	PR00367	2.3E-10	90	106	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSSSPPSPSS LQPSHDQSPL QISIEPETAT CNSSMSPSPP SPSSNPLPKL SDEPKLPRHH 60 RSRKHPVYRG VRMRSWGKWV SEIRQPRKKS RIWLGTFPTP EMAARAHDVA ALCIKGESAI 120 FNFPRLVNLF PRPVSLMPRD IQAAAAQAAA MAEFNTLPSS SSSSSNDSES EELEEIVQLP 180 NIDGSYELGE LIMIEEEERW VYPPLEDFCR EFSGEIMAAE RLIRSDFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-19	65	129	12	77	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_109.32

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021891938.1	1e-165	ethylene-responsive transcription factor ERF036
Swissprot	Q9LYD3	8e-53	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0D2QNZ7	8e-69	A0A0D2QNZ7_GOSRA; Uncharacterized protein
STRING	evm.model.supercontig_109.32	1e-164	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	5e-46	ERF family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_109.32

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]