PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_108.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 504aa    MW: 55086.6 Da    PI: 6.5818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_108.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-092342661548
                                   HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  15 avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +v ++G++ W+ Ia+++  gR +kqc++rw+++l
  evm.model.supercontig_108.29 234 LVGRFGTKKWSQIAKMLR-GRVGKQCRERWHNHL 266
                                   7889**************.*************97 PP
2Myb_DNA-binding46.96.2e-15272314145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   +  WT+eEd++l++a+++ G++ W+   r+++ gR+++ +k++w+
  evm.model.supercontig_108.29 272 KEEWTEEEDLILINAHQEIGNR-WAEMTRRLP-GRSENTIKNHWN 314
                                   578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.093229268IPR001005SANT/Myb domain
PfamPF002492.0E-8233266IPR001005SANT/Myb domain
CDDcd001674.43E-8233266No hitNo description
Gene3DG3DSA:1.10.10.603.6E-20233274IPR009057Homeodomain-like
PROSITE profilePS500908.13233266IPR017877Myb-like domain
SuperFamilySSF466892.96E-25246320IPR009057Homeodomain-like
PROSITE profilePS5129421.845267321IPR017930Myb domain
SMARTSM007171.2E-13271319IPR001005SANT/Myb domain
PfamPF002495.9E-13272314IPR001005SANT/Myb domain
CDDcd001679.33E-11274317No hitNo description
Gene3DG3DSA:1.10.10.602.8E-19275319IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDSTFREEYP FLSSLLYDNP TKPVLENDFT IDGFKLSNYN YSSSSSSSSV SSSSTPKGLF  60
HHLHSVNNFQ SNPVNGSSPP FRLNQFSTEG SAKNPLFGLS STCSSDPFEP YTNGFSSFSN  120
DNLLINPPAA ATGYNGSTKV YNLSDSVNSS VLHGLQGKTS LSWDFNLPEI GSKPITGTGQ  180
IYSPALGLIS GDQGSASGYK VPDEASGIVG VNGYRENAND AEKKEMVTNK KPQLVGRFGT  240
KKWSQIAKML RGRVGKQCRE RWHNHLRPDI KKEEWTEEED LILINAHQEI GNRWAEMTRR  300
LPGRSENTIK NHWNATKRRQ SSSRRSGKNS GKPKHEMLQN YIRTVTASGS SSTYSNTTYN  360
QKIPVVPAGA GGFIGSGTLP NSGYGGWPFT LAPASNENND QGIDFSYDGG SSMEVNEGSE  420
RSSYGYGGYP MVDDGMEIGS GHANGSGSAE SVYNASRGME FDMGARMDED QVYHQNNWMA  480
MHGGEQEMRK EMDLLEMLSH GKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-3823332017104C-Myb DNA-Binding Domain
1msf_C1e-3823332017104C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_108.29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_108.290.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.13e-52myb domain protein 118