PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1076.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ZF-HD

Protein Properties

Length: 246aa MW: 26664.2 Da PI: 7.3328

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1076.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.4	7.2e-33	53	109	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eClkNhA+++Ggha+DGCgEfm++ geegt++alkCaAC+CHRnFHR+e++ evm.model.supercontig_1076.1 53 NAVRYRECLKNHAVNIGGHALDGCGEFMAA-GEEGTIDALKCAACNCHRNFHRKETDG 109 579************************9.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.4E-30	55	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.7E-30	56	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-23	56	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.471	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	5.38E-20	173	244	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.8E-31	175	245	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.3E-25	186	242	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDFEEHEDPE EEMAAMGVPP GYDSLANSSS AGRSKLGGAE AGGGGGSAAG RKNAVRYREC 60 LKNHAVNIGG HALDGCGEFM AAGEEGTIDA LKCAACNCHR NFHRKETDGA GEGIYHHQQQ 120 HHHHHQFSAY YRAAPPAGYL HLTPQPHQHR PLALPAASGG GYSREEEDVS NPSSSGGGGG 180 SGGGLRKRFR TKFTQEQKEK MLAFSERVGW RIQKHDEAVV EQFCAESGVK RHVLKVWMHN 240 NKHTLX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-28	187	244	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1076.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896538.1	0.0	zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	5e-77	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
Swissprot	Q9SB61	5e-77	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A061FDI9	1e-112	A0A061FDI9_THECC; Transcription factor, putative
STRING	evm.model.supercontig_1076.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-70	homeobox protein 22

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1076.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]