PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_107.47
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 305aa    MW: 34532.2 Da    PI: 7.1372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_107.47genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.4e-161764148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  evm.model.supercontig_107.47 17 KGLWSPEEDQRLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                                  678*******************************************97 PP
2Myb_DNA-binding51.52.4e-1670115148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg ++++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
  evm.model.supercontig_107.47  70 RGMFSAQEEESILTLHRMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 115
                                   788*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-221267IPR009057Homeodomain-like
PROSITE profilePS5129418.4651264IPR017930Myb domain
SuperFamilySSF466894.77E-2915111IPR009057Homeodomain-like
SMARTSM007172.2E-111666IPR001005SANT/Myb domain
PfamPF002491.1E-141764IPR001005SANT/Myb domain
CDDcd001673.64E-102064No hitNo description
PROSITE profilePS5129425.24765119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2568119IPR009057Homeodomain-like
SMARTSM007174.2E-1469117IPR001005SANT/Myb domain
PfamPF002493.5E-1570115IPR001005SANT/Myb domain
CDDcd001675.92E-1173115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGCKSSEKPK PKQKHRKGLW SPEEDQRLRN YVLKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GMFSAQEEES ILTLHRMLGN KWSQIAQHLP GRTDNEIKNY WHSYLKKKIA  120
KSEETKSHYT TSSSDNNMDF SPASNNHENS QNNNSNNNNK IIPSSFTHQT STIDEPNKIS  180
SSMPKILFTE WLHLDHVNGG SPSSSGKLPL VSRDDDPTLM THHQHHQDSA DFQESAGYNN  240
LLNEGAFMFG GDHQFNGISN DVLFSNIPQF KFEDDQILGT AFVQDSINGG DDHDMCSDFS  300
WTLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23171197108B-MYB
1h8a_C7e-231711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_107.47
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892079.10.0transcription factor LAF1-like
SwissprotQ9M0K41e-62LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A4D6UZA51e-103A0A4D6UZA5_9ROSI; MYB transcription factor 4
STRINGevm.model.supercontig_107.470.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-62myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]