PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_107.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 669aa    MW: 73764.9 Da    PI: 6.3125
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_107.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.47.7e-24213266155
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  k++++Wt+ LH+rF++av+ +   ekA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
  evm.model.supercontig_107.3 213 KAKVVWTNSLHTRFLHAVHCI-SLEKAVPKKILELMNVPGLTRENVASHLQKYRI 266
                                  6799*****************.99******************************6 PP
2Response_reg82.81.1e-27201271109
                                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                 Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                  vl vdD+ + ++++  +l+  +y +v +++++ +al  l+ ++ +Dl+++D+ mpgmdG++l k+i ee  +lp++++++ +
  evm.model.supercontig_107.3  20 VLAVDDDSTSLSIVSGMLRTWKY-QVSTVKNSVDALSALRVQQhVDLVVTDLHMPGMDGIQLQKQIDEEF-NLPVVIMSSDE 99 
                                  799********************.***************98887**********************9999.9********** PP

                                  THHHHHHHHHTTESEEEESS--HHHHHH CS
                 Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                  +e+ +le l+ Ga  fl+Kp + ++l++
  evm.model.supercontig_107.3 100 TESNMLESLNCGAVYFLVKPLNVDDLRN 127
                                  *************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.1E-3216135No hitNo description
SuperFamilySSF521722.7E-3018137IPR011006CheY-like superfamily
SMARTSM004487.9E-2618129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.98319133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2320128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.19E-2521132No hitNo description
SuperFamilySSF466893.94E-18211270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-25211270IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-23213266IPR006447Myb domain, plants
PROSITE patternPS000180585597IPR018247EF-Hand 1, calcium-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MGVDQRSIPN KMPSLVNFSV LAVDDDSTSL SIVSGMLRTW KYQVSTVKNS VDALSALRVQ  60
QHVDLVVTDL HMPGMDGIQL QKQIDEEFNL PVVIMSSDET ESNMLESLNC GAVYFLVKPL  120
NVDDLRNIWQ YAVAFKRCKS IVIEETGSTI QIRGAASPGR NCDVQLHEEI NSISSVNEAG  180
KKSVPTRKDC KRKALLRRSN EEQEEDRPSA PKKAKVVWTN SLHTRFLHAV HCISLEKAVP  240
KKILELMNVP GLTRENVASH LQKYRIFLKR VAEKGDLSSK TLSHRALRSN FATGHALLED  300
QYKSSSRTPF QPLKGSVISA VGASRPFLSP QPLVGKSVLA DHFRFGQFGK KSSNANPSIF  360
GFEPNQIING ANLPSSGLMS GTMPIYQQET RVADQLFGLA NFGSSSNGFH GSNYNSRSNI  420
DHGNFPINNY AGIRVNSDGE ILGLGQMQLA NPNNVSSSFM NKGIMIDNIN ASNKAINGCF  480
GYLGQDGSSS FAPAQGMNHV MQQGFNTNFM SHAQENLPLV EQQFTAFNYR QGQENDFCFD  540
QHPLDNMENN LQQLGEDGKT FNFQTNDYQS NYQEPGGGLG VLNADLSKDG FINVEELSPL  600
MDKLMIPDLP DNSFPILESS ALNQNAHAIY QAQKDNAGEE VRNNPNVGLD EYSPIFDFEI  660
PNKASLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-20209272164ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_107.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892077.10.0putative two-component response regulator ARR21
STRINGevm.model.supercontig_107.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Representative plantOGRP1212546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-59response regulator 2