PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_107.128
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 392aa    MW: 44113.7 Da    PI: 7.341
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_107.128genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30210269260
                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                                     D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+g+H+h+k
  evm.model.supercontig_107.128 210 ADVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLDPNIFIVTYSGDHTHPK 269
                                    69*************************998****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-30195270IPR003657WRKY domain
PROSITE profilePS5081132.787204270IPR003657WRKY domain
SuperFamilySSF1182906.28E-26204270IPR003657WRKY domain
SMARTSM007744.5E-37209269IPR003657WRKY domain
PfamPF031065.1E-26211268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEDDWDLSAI VRSCRGKASV DKATESDDNS LACLASLTFE EEEDPFSFPS LVKYCFEKSE  60
FDSRSMSPCC ELQNSCRPFL QIPEFHPSAI DDPLVGSSAP AEFDSHRQQQ QHQFEPQDQQ  120
RRKRQVIHGK RSMFHTTPLS SVSTSCSPSR DRRQNAPLLS PSQLQQFQLH DPELPHQQQQ  180
QAHLHKPRCR KRKNQQKRTV CHVTAENLSA DVWAWRKYGQ KPIKGSPYPR NYYRCSSSKG  240
CSARKQVERS NLDPNIFIVT YSGDHTHPKP THRNSLAGST RNKPLSEALK SISSADPEQS  300
KPNPSCSSPL STNSFSPATM NGEEGNMERN PHEGLDSKEQ KEDDILIPNL RLNDHDNIFS  360
RLQTVRFDGS SGGSCDDGVG RSPVSDDNFK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-182102711780Disease resistance protein RRS1
5w3x_D1e-182102711780Disease resistance protein RRS1
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_107.128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892053.10.0probable WRKY transcription factor 27
STRINGevm.model.supercontig_107.1280.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-62WRKY DNA-binding protein 27