PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_106.57
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 388aa    MW: 41978.3 Da    PI: 4.9245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_106.57genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-103123521055
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  evm.model.supercontig_106.57 312 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVHYVKFLQ 352
                                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.053302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-14303367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11307361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-12311356No hitNo description
PfamPF000109.0E-8312352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MESMGAIAEG EWSSLSGMYT TEEADFLAQL LGTCAGEGDP MNMVAGHGGS RMSMAGFEEA  60
AAIHGTSFCF NTNFNGGSNN SSVVFPSSSS SSSMNEGFYM PILANSFGSS GSMPMEFCMG  120
DQENNDNNNI DGNSNFYLID QADNHDWLNL EIMSCDHGNA DEITPISSGK NNGQPLLDDK  180
RSQQKSESQI MIVPPHNTNN PTQNSKKRTR VPADAQKSKR NVRVKKEKNQ KSSVSTASDK  240
EEDINGGGNN NYKQSSSSCC SEEDDSNGSS QEINGGTTTS SLSSKGKAAL NVNGKTRANR  300
GAATDPQSLY ARKRRERINE RLRILQSLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS  360
DDLWMYAPIA YNGMDIGLDL KITSTLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_106.57
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892306.10.0transcription factor bHLH84-like
TrEMBLA0A1R3GZ076e-99A0A1R3GZ07_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_106.570.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-45bHLH family protein