PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_106.31

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB_related

Protein Properties

Length: 314aa MW: 32990.1 Da PI: 9.2501

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_106.31	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.8e-14	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I + ++R+ ++k++w+++ evm.model.supercontig_106.31 5 KQKWTAEEEEALLAGVAKHGPGKWKNILKDPDfapslTNRSNIDLKDKWRNL 56 79************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.813	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.8E-16	2	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-15	4	56	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-9	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-10	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	3.12E-22	6	56	No hit	No description
SuperFamily	SSF46785	2.94E-14	131	212	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	1.8E-13	131	196	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	22.455	133	201	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	3.9E-12	133	199	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.0E-9	135	194	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPDFAPS LTNRSNIDLK DKWRNLSVST 60 GGSGSKDKSK TPKVKAVVAA AAAAAAAAGT ATAAGTATAV PGAPNLAPSA SVAHNASSGT 120 AMDDPSNSID GNNAPRYNAM IFEALSTTKD KNGADIGAIV DYIEQRQEVP PNFRRSISSR 180 LRRLVAQGKL EKVENCYKIR NDASLVTKTP TPKQKDVRAQ RPQSLGSMAS GDMVEEAAMA 240 AAYKVAEAEN KSFLAAEAVK EAERVSKMAE DADSTLQIVK QLYEQFVPVS DHILFSSSGF 300 TVAGSNGEAV ILA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_106.31

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021892274.1	1e-178	telomere repeat-binding factor 4-like
Swissprot	F4I7L1	3e-84	TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBL	A0A1U8JJF5	1e-130	A0A1U8JJF5_GOSHI; telomere repeat-binding factor 4-like
STRING	evm.model.supercontig_106.31	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2321	28	75
Representative plant	OGRP855	16	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	2e-55	MYB_related family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_106.31

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]