 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_104.98 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
NAC |
| Protein Properties |
Length: 260aa MW: 29608.3 Da PI: 8.7424 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_104.98 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 133.7 | 1.3e-41 | 5 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrkn 75
ppGfrF Pt+eelv++yL++k+eg++ +++vi+ vdiy ++P++Lp+ ++ +++ew+fF++ ++++a+g r++
evm.model.supercontig_104.98 5 PPGFRFYPTEEELVSFYLRNKIEGRRgdlnRLIDQVIPVVDIYAYKPSELPRfsgNLCRKDSEWFFFVPMQESEARGGRPR 85
9*************************7764333457***************54554455889******************* PP
NAM 76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
r t++gyWkatg+ v+s+ +g+l+g k+t+vfy+g+ap+g+kt+W m+ey+l
evm.model.supercontig_104.98 86 RLTSTGYWKATGTPGFVYSSsTGRLIGGKRTMVFYNGKAPRGRKTEWKMNEYKL 139
******************9878899***************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 260 aa
Download sequence Send
to blast |
MEDWPPGFRF YPTEEELVSF YLRNKIEGRR GDLNRLIDQV IPVVDIYAYK PSELPRFSGN 60
LCRKDSEWFF FVPMQESEAR GGRPRRLTST GYWKATGTPG FVYSSSTGRL IGGKRTMVFY 120
NGKAPRGRKT EWKMNEYKLA VEAADHHHQP GSASQPTAST STGLPRMTLM QEFSLCRVYK 180
KSKCLRSFDR RPTSALIIQR PMPDQQTDSF NLSYGQMASS ASNQNPNQSA ETSDSQVMGI 240
DDLDWEQLAN LELTDWPFI*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-31 | 5 | 181 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-31 | 5 | 181 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-31 | 5 | 181 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-31 | 5 | 181 | 18 | 165 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-31 | 5 | 181 | 18 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 4e-31 | 5 | 181 | 18 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
