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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_104.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | YABBY | ||||||||
Protein Properties | Length: 126aa MW: 14067.2 Da PI: 10.6773 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 114 | 2.5e-35 | 3 | 115 | 32 | 166 |
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113 + vt+ CGhC +lls ++ + + + +l+ ++++l+ +++++s + +ss+ e++ + ++ evm.model.supercontig_104.5 3 NNAVTIVCGHCGKLLSFDVGVL----PPKPA-----------QLQISNKQLRGEESESSSRCKRISSK--AEHQPKTIS--- 64 688*************998764....33332...........33344444444444444444444432..233333333... PP YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 + ekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWah+P++ evm.model.supercontig_104.5 65 --PQAMEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSAAAKNWAHLPRM 115 ..3567*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.6E-40 | 2 | 115 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.3E-8 | 63 | 113 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.1E-6 | 69 | 113 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MLNNAVTIVC GHCGKLLSFD VGVLPPKPAQ LQISNKQLRG EESESSSRCK RISSKAEHQP 60 KTISPQAMEK RQRVPSAYNR FIKEEIQRIK ANNPDISHRE AFSAAAKNWA HLPRMYPPMG 120 SRNMV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_104.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892489.1 | 3e-89 | protein YABBY 2-like isoform X1 | ||||
Swissprot | Q10FZ7 | 1e-33 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A1Q3B7Z8 | 5e-37 | A0A1Q3B7Z8_CEPFO; YABBY domain-containing protein | ||||
STRING | evm.model.supercontig_104.5 | 7e-89 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-30 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_104.5 |