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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_101.39 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18929.1 Da PI: 7.2149 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.5e-19 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++++g evm.model.supercontig_101.39 30 KYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALAIKG 79 8*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-22 | 30 | 87 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-13 | 30 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 30 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-38 | 30 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-34 | 30 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 30 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
METHHLNLLP STTNPNPNPK KRQRRSDEEK YRGVRMRSWG KWVSEIREPR KKSRIWLGTY 60 PTPEMAARAH DVAALAIKGS SAHLNFPQFA HQLPRPLTTS PKDIQAAAAK AAASTSFQAK 120 HSSTGDDDAH DEDTLFDLPD LVDSNAAFCY CSSSWPPDEL PEFVWDNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 30 | 87 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 24 | PKKRQRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_101.39 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892753.1 | 1e-123 | ethylene-responsive transcription factor ERF035-like | ||||
Swissprot | Q8LBQ7 | 9e-48 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1S2YUE1 | 1e-55 | A0A1S2YUE1_CICAR; ethylene-responsive transcription factor ERF034 | ||||
STRING | evm.model.supercontig_101.39 | 1e-123 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 1e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_101.39 |
Publications ? help Back to Top | |||
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