PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_10.125
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 312aa    MW: 33827.6 Da    PI: 8.69
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_10.125genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20158207255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  evm.model.supercontig_10.125 158 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 207
                                   69*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-15157216No hitNo description
PfamPF008473.1E-14158207IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21158215IPR016177DNA-binding domain
SMARTSM003805.5E-33158221IPR001471AP2/ERF domain
PROSITE profilePS5103222.893158215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-29158215IPR001471AP2/ERF domain
PRINTSPR003671.3E-10159170IPR001471AP2/ERF domain
PRINTSPR003671.3E-10181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MENASQQRIP QSVPFFFRPE THQNPETFHL LTEIPGFYKP PFNPHFPFCS LPSPAPFCRP  60
QSVDISSLFF KDEPANTSPE SETRSHPKLE TRSDSPVLDG IAAVVGQHVL FGSKPAENTA  120
AEESNKAETS AFISGFQRLG SKHEDDKRND VGDSVQKSYR GVRKRPWGRW SAEIRDRIGR  180
CRHWLGTFDT AEEAARAYDA AARRLRGSKA KTNFEIPSVL PLSPSSSSSA CSSISTCSAF  240
DVKRRGKGVN KSLNNSCRRK CAVVTSVAHL FSSSSIVNGG NGSVVELDLK LGVGFDGGSD  300
GDKNDGSSMA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-17157216161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_10.125
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906563.10.0ethylene-responsive transcription factor ERF084
TrEMBLA0A1Q3BSP52e-74A0A1Q3BSP5_CEPFO; AP2 domain-containing protein
STRINGevm.model.supercontig_10.1250.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-29ERF family protein