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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1.422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 788aa MW: 88466.6 Da PI: 5.733 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 385.8 | 4.9e-118 | 414 | 783 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 ++l++ cA+av + d++ a++lL+++++++sp gd mqR+a+yf+ +L+arla+s++e y+al ++ s +++l+ ++l evm.model.supercontig_1.422 414 RTLVTLCAQAVGAADNRSASELLKQIRQHSSPMGDGMQRMAHYFAIGLEARLAGSGTEAYAALVNKPVS---AADVLKGYHL 492 678899**********************************************************99999...99******** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetge 163 f ++P+ k+s++ N++I + +e+++++HiiDf+i +G+QWp+L++ L+sR +gpp+lRiTgv+ p++g ++++ee g+ evm.model.supercontig_1.422 493 FLAACPFRKMSNFFSNKTIIKVAEKATKLHIIDFGILYGFQWPCLIHRLSSRHGGPPRLRITGVDLPQPGfrPAKRVEEAGR 574 *********************************************************************9************ PP GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245 rLa++A++++vpfef++ +a++++++++e+L+++++E+l+Vn+ ++ +lldesv ++s+r++vL+l+++++P+v+++ + evm.model.supercontig_1.422 575 RLANYANTFKVPFEFSP-IAQKWDTIKIEDLKIESDEVLVVNCLYRFRNLLDESVVVDSPRNKVLNLIRKINPTVFILGIVN 655 *****************.7*************************************************************** PP GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 +n++ F +rf eal +ys+lfd+le+++pre +er+ vErel+gre++nv+acegaer+er et+++W++r +aGF+++ evm.model.supercontig_1.422 656 GTYNAPFFITRFREALFHYSTLFDMLETTVPREIQERMLVERELFGREVMNVIACEGAERIERPETYKQWQARNLRAGFRQL 737 ********************************************************************************** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 pl+e++ + k +++ + + + +ee+s++l++gWk+r ++++S+W evm.model.supercontig_1.422 738 PLNEEIKSMTKERVATNYHKDFVIEEDSKWLLQGWKGRIVYALSSW 783 ***************999888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.415 | 387 | 764 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-115 | 414 | 783 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MVMDQPLGEF YGSLNRFRID DETFPVSSNQ NLIVFSQNYV NSASPLDPNS SKASLLSTVS 60 QEGDSHEDYD FSDVVLKYIS QMLMEEDIEE QNCMFQESSA ALQAAEKSLY ELIGEEYPPF 120 PNQKSVSKVD QKHESQDERH DLTCNYSSSI GCVSTSSLTD PGWYPPFPNH ESVSNVDQKH 180 ESPDEKRDLT SNCSSSISVV SPSYLADPGG NSDFGEHKSL CVALQTSSQS SPGSANSAAN 240 VVYGFMDSPV SNIRFPDIFD DRESVTRFKR GLEEASKFLP NSTNLSVGLG YSGLSIKDLK 300 EEPECIVVKA EKKVEEECSL DGSRGRKNPF PEDVFTESER RSKQSAFSTD SNVSPEMYDM 360 VLLQCGSGTE AALREAWQNE TNKNTQQNGQ LTGTSGGKSR RKKQERKKDI VDLRTLVTLC 420 AQAVGAADNR SASELLKQIR QHSSPMGDGM QRMAHYFAIG LEARLAGSGT EAYAALVNKP 480 VSAADVLKGY HLFLAACPFR KMSNFFSNKT IIKVAEKATK LHIIDFGILY GFQWPCLIHR 540 LSSRHGGPPR LRITGVDLPQ PGFRPAKRVE EAGRRLANYA NTFKVPFEFS PIAQKWDTIK 600 IEDLKIESDE VLVVNCLYRF RNLLDESVVV DSPRNKVLNL IRKINPTVFI LGIVNGTYNA 660 PFFITRFREA LFHYSTLFDM LETTVPREIQ ERMLVERELF GREVMNVIAC EGAERIERPE 720 TYKQWQARNL RAGFRQLPLN EEIKSMTKER VATNYHKDFV IEEDSKWLLQ GWKGRIVYAL 780 SSWVPAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-53 | 396 | 785 | 1 | 379 | Protein SCARECROW |
5b3h_D | 4e-53 | 396 | 785 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1.422 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910422.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_021910424.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_021910425.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A067G0Q2 | 0.0 | A0A067G0Q2_CITSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1.422 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1.422 |