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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1.277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C3H | ||||||||
Protein Properties | Length: 148aa MW: 16757.4 Da PI: 10.287 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.9e-06 | 92 | 113 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C f+ + G+C G +CkF+H+ evm.model.supercontig_1.277 92 IVCEFYKA-GQCTKGFKCKFSHD 113 57996666.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.094 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-7 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-5 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MPPKVQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD STKVAVKKKK 60 EEEKAREKEL NDLFKVAISQ PKVPVGVDPK SIVCEFYKAG QCTKGFKCKF SHDLNVQRKG 120 EKIDIYSDKR DQGSQTEICL CYRSYAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1.277 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 7e-36 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 7e-36 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574423.1 | 1e-78 | zinc finger CCCH domain-containing protein 21 | ||||
Refseq | XP_020595047.1 | 2e-80 | zinc finger CCCH domain-containing protein 21-like, partial | ||||
Swissprot | Q9SK74 | 4e-70 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | A0A2P2K2T8 | 2e-78 | A0A2P2K2T8_RHIMU; Zinc finger CCCH domain-containing protein 11 | ||||
STRING | evm.model.supercontig_1.277 | 1e-101 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 6e-69 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1.277 |