PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.264
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YB
Protein Properties Length: 162aa    MW: 17489.6 Da    PI: 5.7211
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.264genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.99.1e-5625119195
                        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                  vreqdr+lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+ep
  evm.model.supercontig_1.264  25 VREQDRYLPIANISRIMKKALPPNGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEP 106
                                  69******************************************************************************** PP

                        NF-YB  83 lkvylkkyreleg 95 
                                  lk+yl++yre ++
  evm.model.supercontig_1.264 107 LKIYLARYREGDT 119
                                  *********9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-5320120IPR009072Histone-fold
SuperFamilySSF471131.55E-3928122IPR009072Histone-fold
PfamPF008081.3E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.8E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.8E-217896No hitNo description
PRINTSPR006152.8E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MADAPTSPAG GSHESGGEQS PHSGVREQDR YLPIANISRI MKKALPPNGK IAKDAKDTVQ  60
ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKIY LARYREGDTK  120
GSARGGDGSV KRDAVGGLPG QNAQFLHCLF FIDDALSSFS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4825116192Transcription factor HapC (Eurofung)
4g92_B8e-4825116192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.264
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910503.11e-102nuclear transcription factor Y subunit B-1-like
SwissprotQ9SLG05e-76NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A0H3XV682e-96A0A0H3XV68_VERFO; Nuclear transcription factor Y subunit B-1
TrEMBLB9SD432e-96B9SD43_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGevm.model.supercontig_1.2641e-117(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.72e-80nuclear factor Y, subunit B1