PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.215
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 286aa    MW: 32416.1 Da    PI: 7.594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.215genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05121140120
                                  EEETTTTEEESSHHHHHHHH CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                  ++C+ C+k+F+r  n++ H+
  evm.model.supercontig_1.215 121 FSCSVCNKTFNRYNNMQMHM 140
                                  89*****************9 PP
2zf-C2H216.13.1e-05206228123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                  ++C +Cgk+F  + + ++H +++
  evm.model.supercontig_1.215 206 FSCRKCGKPFAVRGDWRTHEKNC 228
                                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-5117143No hitNo description
Gene3DG3DSA:3.30.160.604.2E-6121140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128747.3E-5121140No hitNo description
PROSITE profilePS5015710.429121148IPR007087Zinc finger, C2H2
SMARTSM003550.071121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SMARTSM00355220169201IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.7E-6189226No hitNo description
Gene3DG3DSA:3.30.160.603.6E-5192226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035565206226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQTPFAFTYI SSSKSTSYLE ADDVEDEDSI ILSLRPPGQQ HVSKQYTNIH RLSQKRSHLS  60
YHHNHQDPTN EINGVTVALH IGAPSAEGSS SRNLNENGSG LVEGQYWIPS PAQILVGPTQ  120
FSCSVCNKTF NRYNNMQMHM WGHGSQYRKG PESLRGSKPS SSMLRLPCYC CAEGCKNNIE  180
HPRSRPLKDF RTLQTHYKRK HGAKPFSCRK CGKPFAVRGD WRTHEKNCGK LWFCICGSDF  240
KHKRSLKDHV RAFGDGHAPH TVGFYEVEVE EDEHDDDDDD YLDDI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.215
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910204.10.0zinc finger protein WIP6
SwissprotQ9FX681e-124ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2N9F1Q51e-145A0A2N9F1Q5_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_1.2150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-126C2H2-like zinc finger protein