PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1.202

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 459aa MW: 50638.7 Da PI: 5.8995

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1.202	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	172	212	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ L++ ++L evm.model.supercontig_1.202 172 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLTQLEQEL 212 788*************************9766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.5E-8	166	217	No hit	No description
SMART	SM00338	3.7E-9	168	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	170	214	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.08E-24	172	224	No hit	No description
Pfam	PF00170	1.7E-7	172	212	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.56E-7	172	215	No hit	No description
PROSITE pattern	PS00036	0	175	190	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.1E-31	257	330	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MQSSFRPASF NPDLYAHSSF FFRDDGSRNQ TRFADLGELD HSATAFHQDD AVDLSPSSLF 60 SLKSSNVSAI SNNMHYGTLN TSVGSADIIS TGTGCLDTGQ FMYQKGTTVG APLGNGHIEN 120 WGDSGIADNS QQTDTSTDVD TDDKNQFYGV QQGALVAIDS MDQSKAKAGD QKTLRRLAQN 180 REAARKSRLR KKAYVQQLEN SRLRLTQLEQ ELQRATQQGI FISTGATGEY GHTLTGNGPL 240 AFDLEYARWL DDHQRLINEL RSAVNSHMDD NELCIVVDGV MAHYDEIFRL KSMGAKADVF 300 HMLSGMWKTP AERCFMWLGG FRSSELLKIL GNHLEPLTEQ QLMGICNLQQ SSQQAEDALS 360 QGMEALQQSL VDTLSFASLG PCGSGNVADY MGQMAIAMGK LATLESFLHQ ADLLRQQILQ 420 QMHRILTTRQ AARALLVISD YTSRLRALSS LWLARPRD*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MQSSFRPASF NPDLYAHSSF FFRDDGSRNQ TRFADLGELD HSATAFHQDD AVDLSPSSLF  60
SLKSSNVSAI SNNMHYGTLN TSVGSADIIS TGTGCLDTGQ FMYQKGTTVG APLGNGHIEN  120
WGDSGIADNS QQTDTSTDVD TDDKNQFYGV QQGALVAIDS MDQSKAKAGD QKTLRRLAQN  180
REAARKSRLR KKAYVQQLEN SRLRLTQLEQ ELQRATQQGI FISTGATGEY GHTLTGNGPL  240
AFDLEYARWL DDHQRLINEL RSAVNSHMDD NELCIVVDGV MAHYDEIFRL KSMGAKADVF  300
HMLSGMWKTP AERCFMWLGG FRSSELLKIL GNHLEPLTEQ QLMGICNLQQ SSQQAEDALS  360
QGMEALQQSL VDTLSFASLG PCGSGNVADY MGQMAIAMGK LATLESFLHQ ADLLRQQILQ  420
QMHRILTTRQ AARALLVISD YTSRLRALSS LWLARPRD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1.202

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910389.1	0.0	transcription factor TGA2.3 isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A061ECH8	0.0	A0A061ECH8_THECC; BZIP transcription factor family protein isoform 1
STRING	evm.model.supercontig_1.202	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133
Representative plant	OGRP722	16	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-158	bZIP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1.202

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]