PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.175
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 574aa    MW: 61565.9 Da    PI: 5.5179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.175genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09385433355
                                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  evm.model.supercontig_1.175 385 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 433
                                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17380451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-11380437No hitNo description
PROSITE profilePS5088815.485382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16383449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6385433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10388438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDMSEKDNFE VARGNDTNPM NYNSPTVASD WRFSSGNLSN THMGLIPSDN PMAVCSSSCS  60
ASMVDSFGQN LWEHPPNSQS MGFCDINVQN NASTSNAMGI SKGSPASLRS SIDRSLDMAW  120
NPPSAMLKGS ILLPSAPGML PQSLAQFPAD SAFIERAARF SCFNGGNFGD VVTPFGIPEA  180
MGLYTRTAGM IQGPQDLFLG SELKSVSGGQ FHKNQLNVGE PSKDASLTVE RGPTEGSPLK  240
NDRRSESIAR SQDEAKQVVP GSGNESDEAE FCGGGGGGQD EPSGMEGTGG ETSARCLSSK  300
KRKRAGQFAW LTLKCLENEI DQSGGGQQPG ETMKDNAENH QMCEKNPSST PNKTTGKHGK  360
QTSQASDPPK EEYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCSKVTGKAV  420
MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DFNLEGLLAK DILQSRAIPS STLGFPPDIS  480
MAYPPMHPSQ PGLIPATLPA ICSPSDILRR NINSQLPSMR GAMTGGFKEP AQMPNGWDDE  540
LHNVVQMSYG STAPPGDQDV DGSLPSGHMK VEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.175
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910341.10.0transcription factor bHLH49 isoform X1
TrEMBLB9HWS90.0B9HWS9_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_1.1750.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-136bHLH family protein