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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_45591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 23652 Da PI: 9.0005 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.8 | 1.5e-17 | 61 | 146 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA++ GF + +++s+ + ++g+ t + C ++gk+++ kk + + r+ t+t+Ckak++v e +g ++ +++leHnHel evm.TU.contig_45591.1 61 YYSKYAQREGFGIMRRSSRCR-EDGKLTYFILACAQSGKTRSIAKK---RFQFRQLTKTNCKAKINVVVEPEGCVHICNVVLEHNHEL 144 9*************9987775.9999**************999887...8999*********************************** PP FAR1 90 ap 91 +p evm.TU.contig_45591.1 145 SP 146 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-15 | 61 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
EMESNSNLKV PFDRDAIDSC CNNRVENGKE EEHGAGGLNG DEVGPPCVGM VFASQDEVRS 60 YYSKYAQREG FGIMRRSSRC REDGKLTYFI LACAQSGKTR SIAKKRFQFR QLTKTNCKAK 120 INVVVEPEGC VHICNVVLEH NHELSPGKKQ RNICKRSGTP RNKRKYALEE LVGAPVQLDS 180 RLASRESWAP LNLPSGANYL QFVLLMKCFA S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_45591.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910756.1 | 1e-144 | protein FAR1-RELATED SEQUENCE 8-like | ||||
TrEMBL | A0A2K1ZWF5 | 3e-60 | A0A2K1ZWF5_POPTR; Uncharacterized protein | ||||
STRING | evm.TU.contig_45591.1 | 1e-157 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17343 | 3 | 10 | Representative plant | OGRP10377 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_45591.1 |