PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_45420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 177aa MW: 19617 Da PI: 7.363 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 119 | 1.2e-36 | 25 | 175 | 1 | 138 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 mdd g+re r+k+ +y+ a + l +++ +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++ evm.TU.contig_45420.1 25 MDDGGHREngRHKAdQYKTAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDNAI 112 9*****999*****9**9554444444431135******************************************************* PP GAGA_bind 82 lalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpie 138 ++l+++ensla s++p+g+q+++g+k++++ qq +++ p++++ ++++re++ +a p++ evm.TU.contig_45420.1 113 ATLQYRENSLAsgnlSSCPPGCQISRGVKHMHHPQQhVHHmPHMSEGPYGTREMHSGDAIPVS 175 *********9999999********************65558**************99999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.4E-18 | 25 | 175 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 6.6E-11 | 25 | 177 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MACGGGVGLK TCLFLGSDIP FEKQMDDGGH RENGRHKADQ YKTAQGQWLM QHQPSMKQIM 60 AIMAERDAAI QERNLAISEK KAAIAERDMA FLQRDTAIAE RNNAIMERDN AIATLQYREN 120 SLASGNLSSC PPGCQISRGV KHMHHPQQHV HHMPHMSEGP YGTREMHSGD AIPVSPX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_45420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910765.1 | 1e-110 | protein BASIC PENTACYSTEINE6-like, partial | ||||
Swissprot | Q8L999 | 2e-69 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A2I4DVH4 | 9e-93 | A0A2I4DVH4_JUGRE; protein BASIC PENTACYSTEINE6-like isoform X2 | ||||
TrEMBL | A0A2I4DVH8 | 2e-92 | A0A2I4DVH8_JUGRE; protein BASIC PENTACYSTEINE6-like isoform X1 | ||||
STRING | evm.TU.contig_45420.1 | 1e-130 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6169 | 26 | 47 | Representative plant | OGRP2841 | 13 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 8e-70 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_45420.1 |