PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_45270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | G2-like | ||||||||
Protein Properties | Length: 148aa MW: 16487.7 Da PI: 6.8042 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 22.4 | 2.8e-07 | 124 | 145 | 1 | 22 |
G2-like 1 kprlrWtpeLHerFveaveqLG 22 k++++Wt+eLH++F++a++ LG evm.TU.contig_45270.1 124 KNKIVWTHELHNKFLQAIDFLG 145 6899*****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-5 | 123 | 147 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MSSDRDENGI LGSLYKGAEF HLVKPLTYSD VQSLWQFSVL RKIKLNRFAS SSSSSSDQGM 60 NTSAAESRHI FGSISLGSND DDDDSGANHS SGRWSHYYGS KRKQPENSSS RSSDENFDSS 120 IVKKNKIVWT HELHNKFLQA IDFLGADX |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_45270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903262.1 | 4e-47 | two-component response regulator ARR14-like | ||||
STRING | evm.TU.contig_45270.1 | 1e-102 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 2e-06 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_45270.1 |