PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Basic Information? help Back to Top

TF ID

evm.TU.contig_40341.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 120aa MW: 13411.6 Da PI: 10.0968

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_40341.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.1	4e-16	42	80	1	39
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGa 39 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++F + evm.TU.contig_40341.2 42 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFER 80 7************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.092	41	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-14	42	80	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MEYSDSNNTN TSPSSSQSLS PSSSPPPSSG LRPPVVPVVI SPCAACKILR RRCAEKCVLA 60 PYFPPTEPAK FTIAHRVFER FEWKKIKLFG RFDLGCKCFQ RFILEIFQVP YPTGKQKKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_40341.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910984.1	2e-48	LOW QUALITY PROTEIN: LOB domain-containing protein 1-like
TrEMBL	A0A1J7HRV0	2e-22	A0A1J7HRV0_LUPAN; Uncharacterized protein
STRING	evm.TU.contig_40341.2	8e-82	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-22	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	evm.TU.contig_40341.2