PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_35924.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 281aa    MW: 32652.5 Da    PI: 9.969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_35924.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05149168120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            + C++C+k+F+r  n++ H+
  evm.TU.contig_35924.1 149 FACSICSKTFNRYNNMQMHM 168
                            78*****************9 PP
2zf-C2H215.45.3e-05233255123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk F  k + ++H +++
  evm.TU.contig_35924.1 233 FMCRKCGKAFAVKGDWRTHEKNC 255
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
SuperFamilySSF576671.84E-5145172No hitNo description
PROSITE profilePS5015710.741149176IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5149168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17149171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SMARTSM00355240195228IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.83E-7215253No hitNo description
Gene3DG3DSA:3.30.160.602.3E-6229253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.787233253IPR007087Zinc finger, C2H2
SMARTSM0035550233253IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGLRNLQYVD HHNTRSTFIE WLKPSSYSSS SSSCVTQQVE LWNPKMMMSM LNLPLLYQKS  60
QHETIQCLPL LNRLPETKSI VTEDEDRNEG IKQKIKQEKV TVALHIGLPN TQPDYSLEKK  120
DPKEKQTFNS QTRFWIPTPA QILVGPMQFA CSICSKTFNR YNNMQMHMWG HGSEYRKGAD  180
SLRGTQPAAM LRLPCYCCVQ GCKNNINHPQ AKPLKDFRTL QTHYKRKHGV KPFMCRKCGK  240
AFAVKGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIRSF X
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_35924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911205.10.0zinc finger protein WIP3-like, partial
SwissprotQ9SGD11e-111ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A067K8X31e-135A0A067K8X3_JATCU; Uncharacterized protein
STRINGevm.TU.contig_35924.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-110WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]