PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 281aa MW: 32652.5 Da PI: 9.969

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_35924.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	149	168	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ evm.TU.contig_35924.1 149 FACSICSKTFNRYNNMQMHM 168 78*****************9 PP
2	zf-C2H2	15.4	5.3e-05	233	255	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F k + ++H +++ evm.TU.contig_35924.1 233 FMCRKCGKAFAVKGDWRTHEKNC 255 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	34	No hit	No description
SuperFamily	SSF57667	1.84E-5	145	172	No hit	No description
PROSITE profile	PS50157	10.741	149	176	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-5	149	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.17	149	171	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	151	171	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	195	228	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	7.83E-7	215	253	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-6	229	253	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.787	233	253	IPR007087	Zinc finger, C2H2
SMART	SM00355	50	233	253	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGLRNLQYVD HHNTRSTFIE WLKPSSYSSS SSSCVTQQVE LWNPKMMMSM LNLPLLYQKS 60 QHETIQCLPL LNRLPETKSI VTEDEDRNEG IKQKIKQEKV TVALHIGLPN TQPDYSLEKK 120 DPKEKQTFNS QTRFWIPTPA QILVGPMQFA CSICSKTFNR YNNMQMHMWG HGSEYRKGAD 180 SLRGTQPAAM LRLPCYCCVQ GCKNNINHPQ AKPLKDFRTL QTHYKRKHGV KPFMCRKCGK 240 AFAVKGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIRSF X

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_35924.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021911205.1	0.0	zinc finger protein WIP3-like, partial
Swissprot	Q9SGD1	1e-111	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A067K8X3	1e-135	A0A067K8X3_JATCU; Uncharacterized protein
STRING	evm.TU.contig_35924.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-110	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	evm.TU.contig_35924.1

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]