PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_35890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 75aa MW: 8988.5 Da PI: 6.5128 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.4 | 7.7e-08 | 8 | 33 | 17 | 42 |
HHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 17 rngilKKAeELSvLCdaevaviifss 42 + ++KK ELS LC ++++ ii+ + evm.TU.contig_35890.1 8 EEELMKKVRELSMLCKVKACEIIYNP 33 5679****************999965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.22E-10 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-7 | 4 | 33 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
KSYFQEKEEE LMKKVRELSM LCKVKACEII YNPYDWQPEV WSSLFLAQHL LADFKMMPEK 60 EQSKKMVNQE SFLH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_35890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911860.1 | 1e-26 | agamous-like MADS-box protein AGL80, partial | ||||
Refseq | XP_021911963.1 | 1e-26 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-15 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | U5GF69 | 2e-22 | U5GF69_POPTR; Uncharacterized protein | ||||
STRING | evm.TU.contig_35890.1 | 3e-47 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27810.1 | 2e-20 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_35890.1 |
Publications ? help Back to Top | |||
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