PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_31184.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 332aa MW: 36512.1 Da PI: 4.8653

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_31184.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	277	319	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 e+ r RR++i++ + Lr+++P+ K + +L +A++Y+ksL evm.TU.contig_31184.1 277 ENKRLRREKIRETVSVLRSIIPNgE-----DKDP-MVVLDEAIDYLKSL 319 67799****************44.....4444.89********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-8	273	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0045	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.36E-5	280	320	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.6E-7	280	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MVCQAASQTR FRALKYENGI AGSATIVVRV IACFQPLQDC QILVLSGWER TLDPGFLGID 60 WNCNPLIFIP PVLHFIPLAR IKFRGGPGCA QKRFLVFDQS GCQTRLIFSS GVETRNQHFT 120 PLGPKFPGVN REVPQSKEEL KIDIGMNSMD EVDGIHGTDV ESEMREDTEE LNALLYSDDS 180 DGDGDYTEDD EVTSTGHSPS TMTAHGKQGS FEGSTGGMSS YVGPSKKRKL FDHGDHDLHS 240 LLDTASSVNP CKCAEYEDDA ESSCGNHNRE IDLLSSENKR LRREKIRETV SVLRSIIPNG 300 EDKDPMVVLD EAIDYLKSLK LKAKALGLNA L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_31184.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM486483	7e-35	AM486483.2 Vitis vinifera contig VV78X018809.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021911619.1	1e-178	LOW QUALITY PROTEIN: transcription factor bHLH145
TrEMBL	A0A1R3GHW6	1e-104	A0A1R3GHW6_9ROSI; Uncharacterized protein
STRING	evm.TU.contig_31184.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10530	5	9
Representative plant	OGRP5768	3	4

Link Out ? help Back to Top
Phytozome	evm.TU.contig_31184.1